Boot Camp 2022, Day 3 Materials

The handouts for the final day are given below. Download the final program (PDF).

The sessions will be held in Carpenter Engineering room 112. A campus map is available with this location circled.

If you need parking, you can obtain a visitor's pass from the parking office. First time visitors can request up to one week of free parking. Please visit the visitor parking website and follow the instructions for a guest/visitor permit. Other parking information is available at the main Parking Services website.

• Session 11 - Bioinformatics and BLAST Searching
  • Session 11 Slides
  • DNA and Protein Sequences
  • Homology Model: 1pin.pdb
  • Homology Model: swiss.pdb
  • Homology Model: phyre2.pdb
  • Homology Model: itasser.pdb
  • PyMOL Project: Aligned Homology Models


• Session 12 - Programming in Python
  • Session 12 Slides
  • Python Template
  • Python Code for Replacing B-factor Column
  • Python Code for Fitting a Folding Model to Fluorescence Data
  • GB3 PDB File (2OED.pdb)
  • B-factors for 2OED
  • Raw Fluorescence Data for Fitting


• Session 13 - Literature Searching and EndNote
  • Session 13 Slides
  • Session 13 Handout
  • Example ENCase.txt file
  • Curated Journals Terms List